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BioRuby
BioRuby 2.0.0   
... the Ruby programming language. BioRuby has components for sequence analysis, pathway analysis, protein modelling and phylogenetic analysis; it supports many widely ...
Open Source
tags: bioinformatics library, bioinformatics development, ruby library, bioinformatics, library, develop

Advanced Pathway Painter
Advanced Pathway Painter 2.31   
... any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the ... experiment data is done over the gene or protein names and their accession numbers. Furthermore the user ...
Freeware
tags: pathway, kegg, genmapp, biocarta, biology, bioinformatics, bioscience, affymetrix, microarray, experiment, analysis, analyse, ncbi, sequence, protein, gene, annotation

GENOM 2005
GENOM 2005 3.42   
... gene information official gene names, location, function prediction, sequences, database references (GeneOntology, InterPro, SwissPROT ,ENSEMBL, GeneBank...), multiple ... (user friendly drag and drop operation), function prediction, Sequence analysis and many things more. ...
Demo | $1 637.00
tags: affymetrix, microarray, pathway, function prediction, probeset, kegg, genmapp, biocarta, biology, bioscience, analyse, ncbi, sequence, dna, protein

Unipro UGENE 64-bit
Unipro UGENE 64-bit 50.0   
... a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, analysis, annotation of genetic sequences. Features: Integrated tools Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; HMM profiles ...
Freeware
tags: DNA x64, education x64, visual software x64, analyze x64, genetic x64, genome analyzer, genome analysis, sequence alignment

Staden
Staden 2.0.0b11   
A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools ... Unix, Linux, MacOSX and MS Windows. Features: Sequence assembly (gap4/gap5) DNA/Protein analysis (spin) Sequence alignment Genome ...
Open Source
tags: DNA, Gap4, Gap5, Spin, trev, ancillary tools, Staden Package

DNAssist
DNAssist 3.11   
DNAssist provides an intuitive, single interface within which sequence files are displayed, edited and analyzed. The user ... the font, font size, and line length. A sequence is analyzed by simply bringing an editor window ...
Freeware
tags: DNAssist, DNA Analyzer

Portable UGENE
Portable UGENE 52.0   
... integrates a wide range of bioinformatics tools, including sequence alignment, phylogenetic analysis, and molecular modeling. It supports ... offering detailed graphical representations of biological data. From sequence alignments to 3D molecular structures, the software provides ...
Open Source
tags: Portable UGENE, download Portable UGENE, Portable UGENE free download, genome analysis, DNA sequencing program, Bioinformatics analyzer, Bioinformatics, genome, analyzer, analyze

miRPI screenshot
miRPI 1.0   
... of 20-24 nucleotide length that regulate gene and protein expression in plants and animals. MiRNAs have so ... is faster and generally follows AB initio and sequence alignment methods. Here we developed MIRPI, a new ...
Freeware
tags: find conserved miRNA, conserved miRNA finder, search conserved miRNA, analyze, analysis, find

Geneious PRO x64
Geneious PRO x64 6.0.4   
... sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis, contig assembly, primer design and cloning, access to NCBI and UniProt, BLAST, protein structure viewing, automated PubMed searching, and more. It ...
Trialware | $249.00
tags: x64 molecular biology, x64 biochemistry research, x64 molecular research, x64 bioinformatics, x64 biology, x64 research

Geneious Basic x64
Geneious Basic x64 6.0.4   
... functions from publication or nucleotide searching through to sequence alignment and tree-building, and includes functions for extracting protein translations, sequence analysis and 3D structure visualization. Geneious lets ... set up agents to let new publications and sequences automatically find you, and eliminates the need for ...
Freeware
tags: x64 molecular biology, x64 biochemistry research, x64 molecular research, x64 bioinformatics, x64 biology, x64 research

JDet
JDet 1.4.1   
... and visualization of function-related conservation patterns in multiple sequence alignments and structures. It contains the set of ... programs for extracting this kind of information from protein alignments. This software has been developed by ...
Open Source
tags: protein alignment, view protein sequence, align protein sequence, visualization, align, alignment

Gene Runner
Gene Runner 6.5.49 Beta   
Gene Runner saves the information on Amino Acids in tables and this data is also be used with the 'Protein Analysis' functions, the 'Suppressor' and the 'Translation Tables'. This is required ...
Freeware
tags: DNA analysis, analyze sequence, gene analysis, analyzer, sequence, analyze, DNA

Zeus
Zeus 1.5   
... output very high quality molecular graphics. Zeus incorporates Sequence Search/Highlighting within the molecular structure with Wildcard capability. A residue keypad allows easy entry of sequences. PDB files can be automatically downloaded from the ...
Freeware
tags: PDB, peptide, protein, dna, nucleic acid, residues, molecular, viewer, molecule, atoms, visualisation

Unipro UGENE
Unipro UGENE 52.0   
... UGENE's core strengths is its extensive toolkit for sequence analysis. It offers robust features for sequence alignment, assembly, and annotation, supporting both DNA and protein sequences. The integrated algorithms, such as ClustalW, MUSCLE, ...
Open Source
tags: Unipro UGENE, download Unipro UGENE, Unipro UGENE free download, genome analyzer, genome analysis, sequence alignment, genome, analyzer, HMM, builder

Jalview
Jalview 2.11.4.0   
... tool for the analysis and visualization of multiple sequence alignments. This versatile application is designed to cater ... intuitive and interactive platform for the exploration of sequence alignments. Users can effortlessly import sequences from various ...
Open Source
tags: Jalview, Jalview free download, download Jalview, sequence alignment, visualization, biology, phylogenetic analysis, multiple alignment editor, University of Dundee, bioinformatics, sequence, molecular biology, molecule, protein, sequence analyzer
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