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Avogadro
Avogadro 1.2.0   
... for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture. Features: * Cross-Platform: ...
Freeware
tags: molecular modeling, material science, computational chemistry, molecule, molecular, edit

Chemistry Development Kit
Chemistry Development Kit 1.5.6 Dev   
Chemistry Development Kit is now developed by more than 40 developers all over the world and used in more than 10 different academic as well as industrial projects world wide. ...
Open Source
tags: Java library, chemoInformatics library, bioinformatics library, chemistry, chemoinformatics, bioinformatics

BioRuby
BioRuby 2.0.0   
Open source bioinformatics library for Ruby BioRuby is a free library that provides an integrated environment in bioinformatics for the Ruby language. This BioRuby project ... set of free development tools and libraries for bioinformatics and molecular biology, for the Ruby programming language. ...
Open Source
tags: bioinformatics library, bioinformatics development, ruby library, bioinformatics, library, develop

Advanced Pathway Painter
Advanced Pathway Painter 2.31   
This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours ...
Freeware
tags: pathway, kegg, genmapp, biocarta, biology, bioinformatics, bioscience, affymetrix, microarray, experiment, analysis, analyse, ncbi, sequence, protein, gene, annotation

Biopython for Windows (x64 bit)
Biopython for Windows (x64 bit) 1.83   
... the needs of current and future work in bioinformatics. The source code is made available under the ... the world. We work along with the Open Bioinformatics Foundation, who generously host our website, bug tracker, ...
Open Source
tags: biological x64, x64 python, x64 biopython, x64 bio, x64bioinformatic, Windows x64

Portable UGENE
Portable UGENE 52.0   
Portable UGENE, developed by UniPro, is a versatile bioinformatics software suite designed to cater to the needs ... version of UGENE brings the power of comprehensive bioinformatics tools directly to your fingertips, allowing you to ...
Open Source
tags: Portable UGENE, download Portable UGENE, Portable UGENE free download, genome analysis, DNA sequencing program, Bioinformatics analyzer, Bioinformatics, genome, analyzer, analyze

Geneious PRO x64
Geneious PRO x64 6.0.4   
Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring ... public data as it downloads. More... Teach Bioinformatics: * Create interactive tutorials with direct links ...
Trialware | $249.00
tags: x64 molecular biology, x64 biochemistry research, x64 molecular research, x64 bioinformatics, x64 biology, x64 research

Geneious Basic x64
Geneious Basic x64 6.0.4   
... data that allows any molecular biologist do core bioinformatics tasks in a flash by removing painful data-administration. Geneious comes pre-bundled with bioinformatics functions from publication or nucleotide searching through to ...
Freeware
tags: x64 molecular biology, x64 biochemistry research, x64 molecular research, x64 bioinformatics, x64 biology, x64 research

OpenBabelGUI
OpenBabelGUI 2.4.1   
... SMARTS and other methods Supports molecular modeling, cheminformatics, bioinformatics Organic chemistry, inorganic chemistry, solid-state materials, nuclear chemistry ...
Freeware
tags: molecular model, chemical toolbox, analyze molecule, chemistry, analyze, analyzer

Melanie Viewer screenshot
Melanie Viewer 7.0.7   
One of the aims of the SIB is to provide a wealth of useful tools to the international scientific community. The Melanie Viewer 7.0 is one of these tools. This Viewer ...
Freeware
tags: Melanie Viewer, Gel Viewer, Analyze Gel, Viewer, Gel, Melanie

Melanie
Melanie 9.2.2   
Melanie offers a unique and flexible interface for the comprehensive visualization, exploration and analysis of 2D gel data. It provides powerful and innovative solutions to shorten the path from data acquisition ...
Trialware
tags: Gel Analysis, Analyze Gel, 2D Gel, Gel, Analyzer, Analysis

Picard screenshot
Picard 2.27.2   
Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary ...
Open Source
tags: Sequence Alignment Map, bioinformatics tool, BAM manipulation, sequence, bioinformatics, manipulate

SeqView screenshot
SeqView 1.3   
... RGB, BGR sequences. So, if you needed a bioinformatics tool to help you with sequence analysis, give this tool a try and see if its capabilities are enough to satisfy ...
Open Source
tags: analyze sequence file, view sequence file, sequence file analysis, viewer, view, analysis

USeq screenshot
USeq 8.9.6   
... at the Huntsman Cancer Institute in the Utah Bioinformatics Shared Resource Center. A description of the statistics and comparison of methods used in USeq is now published, see Nix DA, ...
Freeware
tags: data sequence, high level analysis, estimate FDR, sequence, estimate, estimation

MZmine
MZmine 2.52   
... on the original MZmine toolbox described in 2006 Bioinformatics publication, but has been completely redesigned and rewritten ... initiated by Matej Oreši? of Quantitative Biology and Bioinformatics group at VTT Technical Research Centre of Finland ...
Open Source
tags: analyze mass spectrometry data, mass spectrometry data analyzer, compile raw data, analysis, analyze, analyzer

Cytoscape x64
Cytoscape x64 3.10.0   
Cytoscape x64 is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. ...
Open Source
tags: x64 molecular interaction network, x64 molecule visualization, x64 bioinformatics viewer, x64 visualization, x64 molecule, x64 Biology

JDet
JDet 1.4.1   
JDet is a multiplatform software for the interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures. It contains the set of tools and features we consider ...
Open Source
tags: protein alignment, view protein sequence, align protein sequence, visualization, align, alignment

Seq Monk
Seq Monk 0.24.1   
SeqMonk is a powerful application designed to enable you to visualize and analyze mapped sequence data. It was written for use with mapped next generation sequence data but can in ...
Open Source
tags: view sequence data, analyse sequence data, sequence data analysis, sequence data, view, analyse

Graphviz
Graphviz 2.38   
... and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. The Graphviz layout programs ...
Freeware
tags: graph layout, automated rendering, output format, graph, automate, layout

Unipro UGENE
Unipro UGENE 52.0   
Unipro UGENE, developed by UniPro, is a comprehensive bioinformatics software suite designed to facilitate the analysis and ... user-friendly interface, which allows users to perform complex bioinformatics tasks without needing extensive programming knowledge. The software ...
Open Source
tags: Unipro UGENE, download Unipro UGENE, Unipro UGENE free download, genome analyzer, genome analysis, sequence alignment, genome, analyzer, HMM, builder

TASSEL
TASSEL 5.2.94   
... with various data formats and integration with other bioinformatics tools ensures smooth data processing and analysis workflows. ... excellent educational resource for teaching genetic analysis and bioinformatics. **Conclusion:** TASSEL is a powerful and ...
Open Source
tags: TASSEL, genotype, bioinformatics, plant breeding, Maize Genetics, TASSEL free download, evaluate association, pattern analysis, linkage evaluation, evaluate, software, download TASSEL, genomic analysis, analyzer, Buckler Lab

Jalview
Jalview 2.11.4.0   
Jalview, a sophisticated bioinformatics software developed by the University of Dundee, stands ... in the fields of molecular biology, genetics, and bioinformatics. At its core, Jalview excels in providing ... tools and databases, enhancing its utility in comprehensive bioinformatics workflows. Users can perform phylogenetic analysis, secondary structure ...
Open Source
tags: Jalview, Jalview free download, download Jalview, sequence alignment, visualization, biology, phylogenetic analysis, multiple alignment editor, University of Dundee, bioinformatics, sequence, molecular biology, molecule, protein, sequence analyzer

dnaspider.exe
dnaspider.exe 1.0.0.189   
... application stands out in the crowded field of bioinformatics tools with its unique blend of user-friendly interface, ... poised to remain a valuable asset in the bioinformatics toolkit for years to come. ...
Open Source
tags: dnaspider.exe, download dnaspider.exe, dnaspider.exe free download, keyboard tweak, tweak keyboard, keyboard functionality, keyboard, tweak, mouse, functioanlity
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